PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233246.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 173aa    MW: 20508.3 Da    PI: 8.5794
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233246.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.32.3e-3451285128
             NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     frF P++eelv++yL++k + +     ++i+e+d++k+ePwd p        + ++  ++++fFs+r  ky+++ r +r+t+ g+Wk tgk++ +
  XP_008233246.1   5 FRFLPSEEELVSHYLREKKQVD-----HIIPEIDLCKHEPWDVPGlyaglftEPESPYQDMFFFSPRVYKYNNSARIERTTALGFWKITGKERVI 94 
                     9**************9985544.....47***************54666544333344588*******************************999 PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++  +  +g kktL+fy+gr ++++kt+Wvm ey l
  XP_008233246.1  95 KA--RGSTGKKKTLTFYEGRVRQSKKTNWVMYEYYL 128
                     98..5569**************************76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.9611156IPR003441NAC domain
PfamPF023652.2E-204127IPR003441NAC domain
SuperFamilySSF1019414.97E-385156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDSYFRFLPS EEELVSHYLR EKKQVDHIIP EIDLCKHEPW DVPGLYAGLF TEPESPYQDM  60
FFFSPRVYKY NNSARIERTT ALGFWKITGK ERVIKARGST GKKKTLTFYE GRVRQSKKTN  120
WVMYEYYLVE DEANPNPKLA QQVMQRDFVL CRLKKKADDH TSIYAEAEPA YDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-28515621165NO APICAL MERISTEM PROTEIN
1ut4_B1e-28515621165NO APICAL MERISTEM PROTEIN
1ut7_A1e-28515621165NO APICAL MERISTEM PROTEIN
1ut7_B1e-28515621165NO APICAL MERISTEM PROTEIN
3swm_A1e-28515624168NAC domain-containing protein 19
3swm_B1e-28515624168NAC domain-containing protein 19
3swm_C1e-28515624168NAC domain-containing protein 19
3swm_D1e-28515624168NAC domain-containing protein 19
3swp_A1e-28515624168NAC domain-containing protein 19
3swp_B1e-28515624168NAC domain-containing protein 19
3swp_C1e-28515624168NAC domain-containing protein 19
3swp_D1e-28515624168NAC domain-containing protein 19
4dul_A1e-28515621165NAC domain-containing protein 19
4dul_B1e-28515621165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233246.11e-129PREDICTED: NAC domain-containing protein 74-like
TrEMBLM5X6941e-102M5X694_PRUPE; Uncharacterized protein (Fragment)
STRINGGLYMA16G01911.13e-40(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14450518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-38NAC transcription factor-like 9